HL_6XIR_025

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

6XIR|1|1|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_025 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.1363

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6XIR|1|1|C|1076
6XIR|1|1|U|1077
6XIR|1|1|U|1078
6XIR|1|1|A|1079
6XIR|1|1|A|1080
6XIR|1|1|U|1081
6XIR|1|1|U|1082
6XIR|1|1|G|1083

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain D

RPL5 isoform 1

Chain T

60S ribosomal protein L21-A

Chain b

RPL29 isoform 1