HL_6XIR_101

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

6XIR|1|2|A|1312, 6XIR|1|2|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_101 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.5365

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6XIR|1|2|C|1309
6XIR|1|2|U|1310
6XIR|1|2|U|1311
6XIR|1|2|A|1312
6XIR|1|2|A|1313
6XIR|1|2|U|1314
6XIR|1|2|U|1315
6XIR|1|2|G|1316

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AH

40S ribosomal protein S17-B

Chain AQ

RPS26B isoform 1