HL_6XZA_073

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

6XZA|1|A2|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_073 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.0611

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6XZA|1|A2|A|1630
6XZA|1|A2|G|1631
6XZA|1|A2|A|1632
6XZA|1|A2|G|1633
6XZA|1|A2|A|1634
6XZA|1|A2|A|1635
6XZA|1|A2|U|1636

Current chains

Chain A2

23S rRNA

Nearby chains