HL_6YDP_011
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6YDP|1|AA|U|433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YDP_011 not in the Motif Atlas
- Geometric match to HL_5J7L_017
- Geometric discrepancy: 0.1348
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6YDP|1|AA|G|426
6YDP|1|AA|A|427
6YDP|1|AA|U|428
6YDP|1|AA|U|429
6YDP|1|AA|A|430
6YDP|1|AA|G|431
6YDP|1|AA|A|432
6YDP|1|AA|U|433
6YDP|1|AA|A|434
6YDP|1|AA|C|435
6YDP|1|AA|C|436
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AG
- Mitochondrial ribosomal protein S7
- Chain AK
- uS11m
- Chain AU
- bS21m
- Chain AV
- fMet-tRNAMet (P site)
- Chain AX
- mRNA
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- Elongation factor G, mitochondrial
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