HL_6YPU_015

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

6YPU|1|2|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YPU_015 not in the Motif Atlas

Homologous match to HL_5J7L_017

Geometric discrepancy: 0.0828

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6YPU|1|2|G|783
6YPU|1|2|A|784
6YPU|1|2|U|785
6YPU|1|2|U|786
6YPU|1|2|A|787
6YPU|1|2|G|788
6YPU|1|2|A|789
6YPU|1|2|U|790
6YPU|1|2|A|791
6YPU|1|2|C|792
6YPU|1|2|C|793

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Small subunit ribosomal RNA; SSU rRNA

Chain l

30S ribosomal protein S11