HL_6YTF_004

3D structure

PDB id

6YTF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6YTF|1|3|G|1091

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YTF_004 not in the Motif Atlas

Homologous match to HL_5J7L_024

Geometric discrepancy: 0.1415

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6YTF|1|3|G|1086
6YTF|1|3|U|1087
6YTF|1|3|U|1088
6YTF|1|3|A|1089
6YTF|1|3|A|1090
6YTF|1|3|G|1091
6YTF|1|3|U|1092
6YTF|1|3|C|1093

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S7