HL_6ZCE_005

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

6ZCE|1|A|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZCE_005 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.1859

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6ZCE|1|A|G|243
6ZCE|1|A|A|244
6ZCE|1|A|U|245
6ZCE|1|A|G|246
6ZCE|1|A|A|247
6ZCE|1|A|U|248
6ZCE|1|A|U|249
6ZCE|1|A|C|250

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain M

40S ribosomal protein S11-A