HL_6ZCE_018

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZCE_018 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.3595

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6ZCE|1|A|A|829
6ZCE|1|A|U|830
6ZCE|1|A|U|831
6ZCE|1|A|U|832
6ZCE|1|A|U|833
6ZCE|1|A|G|834
6ZCE|1|A|U|835
6ZCE|1|A|U|836
6ZCE|1|A|G|837
6ZCE|1|A|G|838
6ZCE|1|A|U|839
6ZCE|1|A|U|840
6ZCE|1|A|U|841
6ZCE|1|A|C|842
6ZCE|1|A|U|843

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain M

40S ribosomal protein S11-A