HL_6ZN5_023
3D structure
- PDB id
- 6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 6ZN5|1|2|A|1253
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZN5_023 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.1492
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6ZN5|1|2|G|1245
6ZN5|1|2|A|1246
6ZN5|1|2|C|1247
6ZN5|1|2|U|1248
6ZN5|1|2|C|1249
6ZN5|1|2|A|1250
6ZN5|1|2|A|1251
6ZN5|1|2|C|1252
6ZN5|1|2|A|1253
6ZN5|1|2|C|1254
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain R
- 40S ribosomal protein S16
- Chain V
- 40S ribosomal protein S20
- Chain f
- 40S ribosomal protein S29
- Chain u
- Pre-rRNA-processing protein TSR1 homolog
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