HL_6ZN5_024

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

6ZN5|1|2|U|1300, 6ZN5|1|2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZN5_024 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2854

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6ZN5|1|2|A|1295
6ZN5|1|2|U|1296
6ZN5|1|2|U|1297
6ZN5|1|2|G|1298
6ZN5|1|2|A|1299
6ZN5|1|2|U|1300
6ZN5|1|2|A|1301
6ZN5|1|2|G|1302
6ZN5|1|2|C|1303
6ZN5|1|2|U|1304

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S15

Chain f

40S ribosomal protein S29

Chain g

Ribosomal protein S27a