HL_6ZN5_026

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

6ZN5|1|2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZN5_026 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.0844

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6ZN5|1|2|G|1366
6ZN5|1|2|U|1367
6ZN5|1|2|U|1368
6ZN5|1|2|A|1369
6ZN5|1|2|A|1370
6ZN5|1|2|U|1371
6ZN5|1|2|U|1372
6ZN5|1|2|C|1373

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S17