HL_6ZON_008
3D structure
- PDB id
- 6ZON (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AAUCAGGGUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZON_008 not in the Motif Atlas
- Geometric match to HL_5TBW_015
- Geometric discrepancy: 0.2867
- The information below is about HL_5TBW_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53971.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6ZON|1|2|A|414
6ZON|1|2|A|415
6ZON|1|2|U|416
6ZON|1|2|C|417
6ZON|1|2|A|418
6ZON|1|2|G|419
6ZON|1|2|G|420
6ZON|1|2|G|421
6ZON|1|2|U|422
6ZON|1|2|U|423
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain c
- 40S ribosomal protein S9
- Chain d
- 40S ribosomal protein S2
- Chain f
- 40S ribosomal protein S15a
- Chain j
- 40S ribosomal protein S23
- Chain n
- 40S ribosomal protein S11
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