HL_6ZQE_008

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

6ZQE|1|D3|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQE_008 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.1955

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6ZQE|1|D3|G|243
6ZQE|1|D3|A|244
6ZQE|1|D3|U|245
6ZQE|1|D3|G|246
6ZQE|1|D3|A|247
6ZQE|1|D3|U|248
6ZQE|1|D3|U|249
6ZQE|1|D3|C|250

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DL

40S ribosomal protein S11-A