HL_6ZQE_021

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQE_021 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.331

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6ZQE|1|D3|A|829
6ZQE|1|D3|U|830
6ZQE|1|D3|U|831
6ZQE|1|D3|U|832
6ZQE|1|D3|U|833
6ZQE|1|D3|G|834
6ZQE|1|D3|U|835
6ZQE|1|D3|U|836
6ZQE|1|D3|G|837
6ZQE|1|D3|G|838
6ZQE|1|D3|U|839
6ZQE|1|D3|U|840
6ZQE|1|D3|U|841
6ZQE|1|D3|C|842
6ZQE|1|D3|U|843

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DL

40S ribosomal protein S11-A