HL_6ZQF_019

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZQF_019 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.1887

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6ZQF|1|D3|A|829
6ZQF|1|D3|U|830
6ZQF|1|D3|U|831
6ZQF|1|D3|U|832
6ZQF|1|D3|U|833
6ZQF|1|D3|G|834
6ZQF|1|D3|U|835
6ZQF|1|D3|U|836
6ZQF|1|D3|G|837
6ZQF|1|D3|G|838
6ZQF|1|D3|U|839
6ZQF|1|D3|U|840
6ZQF|1|D3|U|841
6ZQF|1|D3|C|842
6ZQF|1|D3|U|843

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DL

40S ribosomal protein S11-A