HL_6ZU5_038

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCACCAG

Length

8 nucleotides

Bulged bases

6ZU5|1|L50|C|1485, 6ZU5|1|L50|C|1487, 6ZU5|1|L50|A|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU5_038 not in the Motif Atlas

Homologous match to HL_8C3A_041

Geometric discrepancy: 0.0854

The information below is about HL_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6ZU5|1|L50|C|1483
6ZU5|1|L50|G|1484
6ZU5|1|L50|C|1485
6ZU5|1|L50|A|1486
6ZU5|1|L50|C|1487
6ZU5|1|L50|C|1488
6ZU5|1|L50|A|1489
6ZU5|1|L50|G|1490

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LC0

uL4

Chain LJJ

eL37

Chain LLL

eL39

Chain LP0

uL22