HL_6ZU5_043

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUAGUAAAAA

Length

11 nucleotides

Bulged bases

6ZU5|1|L50|A|1623, 6ZU5|1|L50|G|1624, 6ZU5|1|L50|U|1625, 6ZU5|1|L50|A|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU5_043 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.1536

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6ZU5|1|L50|U|1620
6ZU5|1|L50|U|1621
6ZU5|1|L50|U|1622
6ZU5|1|L50|A|1623
6ZU5|1|L50|G|1624
6ZU5|1|L50|U|1625
6ZU5|1|L50|A|1626
6ZU5|1|L50|A|1627
6ZU5|1|L50|A|1628
6ZU5|1|L50|A|1629
6ZU5|1|L50|A|1630

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LA0

uL2

Chain LJJ

eL37