HL_6ZU5_047

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6ZU5|1|L50|U|1767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU5_047 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0968

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6ZU5|1|L50|U|1761
6ZU5|1|L50|C|1762
6ZU5|1|L50|U|1763
6ZU5|1|L50|A|1764
6ZU5|1|L50|A|1765
6ZU5|1|L50|U|1766
6ZU5|1|L50|U|1767
6ZU5|1|L50|A|1768
6ZU5|1|L50|G|1769

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LV0

uL14

Chain S60

Small subunit ribosomal RNA; SSU rRNA