HL_6ZU9_031

3D structure

PDB id

6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 48S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

6ZU9|1|2|G|1243

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZU9_031 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2885

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6ZU9|1|2|A|1238
6ZU9|1|2|U|1239
6ZU9|1|2|U|1240
6ZU9|1|2|G|1241
6ZU9|1|2|A|1242
6ZU9|1|2|G|1243
6ZU9|1|2|A|1244
6ZU9|1|2|G|1245
6ZU9|1|2|C|1246
6ZU9|1|2|U|1247

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S15

Chain N

40S ribosomal protein S29-A

Chain O

Ubiquitin-40S ribosomal protein S31