HL_6ZVI_025

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVI_025 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.2802

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6ZVI|1|h|A|829
6ZVI|1|h|U|830
6ZVI|1|h|U|831
6ZVI|1|h|U|832
6ZVI|1|h|U|833
6ZVI|1|h|G|834
6ZVI|1|h|U|835
6ZVI|1|h|U|836
6ZVI|1|h|G|837
6ZVI|1|h|G|838
6ZVI|1|h|U|839
6ZVI|1|h|U|840
6ZVI|1|h|U|841
6ZVI|1|h|C|842
6ZVI|1|h|U|843

Current chains

Chain h

18S rRNA

Nearby chains

Chain t

40S ribosomal protein S11-A