HL_6ZVI_033

3D structure

PDB id

6ZVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mbf1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

6ZVI|1|h|G|1243, 6ZVI|1|h|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVI_033 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.1534

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6ZVI|1|h|A|1238
6ZVI|1|h|U|1239
6ZVI|1|h|U|1240
6ZVI|1|h|G|1241
6ZVI|1|h|A|1242
6ZVI|1|h|G|1243
6ZVI|1|h|A|1244
6ZVI|1|h|G|1245
6ZVI|1|h|C|1246
6ZVI|1|h|U|1247

Current chains

Chain h

18S rRNA

Nearby chains

Chain O

RPS29A isoform 1

Chain Q

RPS31 isoform 1

Chain x

RPS15 isoform 1