HL_7ABZ_041

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

7ABZ|1|1|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ABZ_041 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.1555

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7ABZ|1|1|A|1630
7ABZ|1|1|G|1631
7ABZ|1|1|A|1632
7ABZ|1|1|G|1633
7ABZ|1|1|A|1634
7ABZ|1|1|A|1635
7ABZ|1|1|U|1636

Current chains

Chain 1

23S ribosomal RNA

Nearby chains