HL_7AJU_008
3D structure
- PDB id
- 7AJU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAUGAUUC
- Length
- 8 nucleotides
- Bulged bases
- 7AJU|1|D3|U|249
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7AJU_008 not in the Motif Atlas
- Homologous match to HL_4V88_191
- Geometric discrepancy: 0.1293
- The information below is about HL_4V88_191
- Detailed Annotation
- T-loop with 1 bulged base
- Broad Annotation
- T-loop
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
7AJU|1|D3|G|243
7AJU|1|D3|A|244
7AJU|1|D3|U|245
7AJU|1|D3|G|246
7AJU|1|D3|A|247
7AJU|1|D3|U|248
7AJU|1|D3|U|249
7AJU|1|D3|C|250
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DE
- 40S ribosomal protein S4-A
- Chain DG
- 40S ribosomal protein S6-A
- Chain DL
- 40S ribosomal protein S11-A
- Chain UT
- U3 small nucleolar RNA-associated protein 20
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