3D structure

PDB id
7AJU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GAUAGUGGC
Length
9 nucleotides
Bulged bases
7AJU|1|D3|G|337
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7AJU_010 not in the Motif Atlas
Homologous match to HL_4V88_193
Geometric discrepancy: 0.098
The information below is about HL_4V88_193
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_82182.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
19

Unit IDs

7AJU|1|D3|G|330
7AJU|1|D3|A|331
7AJU|1|D3|U|332
7AJU|1|D3|A|333
7AJU|1|D3|G|334
7AJU|1|D3|U|335
7AJU|1|D3|G|336
7AJU|1|D3|G|337
7AJU|1|D3|C|338

Current chains

Chain D3
18S rRNA

Nearby chains

Chain DI
40S ribosomal protein S8-A
Chain DL
40S ribosomal protein S11-A

Coloring options:


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