HL_7AZO_186

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

7AZO|1|23SB|G|2230, 7AZO|1|23SB|G|2231, 7AZO|1|23SB|U|2233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7AZO_186 not in the Motif Atlas

Geometric match to HL_5TBW_004

Geometric discrepancy: 0.3472

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

7AZO|1|23SB|C|2229
7AZO|1|23SB|G|2230
7AZO|1|23SB|G|2231
7AZO|1|23SB|A|2232
7AZO|1|23SB|U|2233
7AZO|1|23SB|G|2234

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L28B

50S ribosomal protein L28

Chain L2B

50S ribosomal protein L2

Chain S4A

30S ribosomal protein S4