HL_7BHP_051

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

7BHP|1|L5|A|3642, 7BHP|1|L5|A|3643, 7BHP|1|L5|U|3644, 7BHP|1|L5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BHP_051 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.1598

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7BHP|1|L5|U|3639
7BHP|1|L5|U|3640
7BHP|1|L5|U|3641
7BHP|1|L5|A|3642
7BHP|1|L5|A|3643
7BHP|1|L5|U|3644
7BHP|1|L5|U|3645
7BHP|1|L5|A|3646
7BHP|1|L5|A|3647
7BHP|1|L5|A|3648
7BHP|1|L5|A|3649

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lj

60S ribosomal protein L37