HL_7BHP_061

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

7BHP|1|L5|A|4214, 7BHP|1|L5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BHP_061 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1199

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

7BHP|1|L5|U|4210
7BHP|1|L5|C|4211
7BHP|1|L5|A|4212
7BHP|1|L5|A|4213
7BHP|1|L5|A|4214
7BHP|1|L5|C|4215
7BHP|1|L5|G|4216
7BHP|1|L5|G|4217
7BHP|1|L5|U|4218
7BHP|1|L5|A|4219
7BHP|1|L5|A|4220
7BHP|1|L5|C|4221
7BHP|1|L5|G|4222

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29