HL_7BHP_085

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGUAACUAUGACU

Length

13 nucleotides

Bulged bases

7BHP|1|L5|A|3760

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BHP_085 not in the Motif Atlas

Homologous match to HL_8P9A_160

Geometric discrepancy: 0.3483

The information below is about HL_8P9A_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70658.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7BHP|1|L5|A|3756
7BHP|1|L5|G|3757
7BHP|1|L5|U|3758
7BHP|1|L5|A|3759
7BHP|1|L5|A|3760
7BHP|1|L5|C|3761
7BHP|1|L5|U|3762
7BHP|1|L5|A|3763
7BHP|1|L5|U|3764
7BHP|1|L5|G|3765
7BHP|1|L5|A|3766
7BHP|1|L5|C|3767
7BHP|1|L5|U|3768

Current chains

Chain L5

28S ribosomal RNA

Nearby chains