HL_7BT6_040

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

7BT6|1|1|C|1846, 7BT6|1|1|G|1848, 7BT6|1|1|A|1850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7BT6_040 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.1537

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7BT6|1|1|C|1844
7BT6|1|1|G|1845
7BT6|1|1|C|1846
7BT6|1|1|A|1847
7BT6|1|1|G|1848
7BT6|1|1|C|1849
7BT6|1|1|A|1850
7BT6|1|1|G|1851

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain j

60S ribosomal protein L37-A