HL_7BT6_052
3D structure
- PDB id
- 7BT6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.12 Å
Loop
- Sequence
- UUAAACGAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 7BT6|1|1|A|2637, 7BT6|1|1|C|2644
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7BT6_052 not in the Motif Atlas
- Homologous match to HL_8C3A_056
- Geometric discrepancy: 0.4447
- The information below is about HL_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
7BT6|1|1|U|2633
7BT6|1|1|U|2634
7BT6|1|1|A|2635
7BT6|1|1|A|2636
7BT6|1|1|A|2637
7BT6|1|1|C|2638
7BT6|1|1|G|2639
7BT6|1|1|A|2640
7BT6|1|1|U|2641
7BT6|1|1|A|2642
7BT6|1|1|A|2643
7BT6|1|1|C|2644
7BT6|1|1|G|2645
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain v
- Ribosome biogenesis protein RPF2
- Chain w
- Regulator of ribosome biosynthesis
Coloring options: