HL_7CPU_052

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

7CPU|1|L5|A|3417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_052 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.1513

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7CPU|1|L5|G|3414
7CPU|1|L5|U|3415
7CPU|1|L5|A|3416
7CPU|1|L5|A|3417
7CPU|1|L5|C|3418
7CPU|1|L5|U|3419
7CPU|1|L5|A|3420
7CPU|1|L5|U|3421
7CPU|1|L5|G|3422
7CPU|1|L5|A|3423
7CPU|1|L5|C|3424

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA