HL_7CPU_053
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UCUAAUUAG
- Length
- 9 nucleotides
- Bulged bases
- 7CPU|1|L5|U|3459
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7CPU_053 not in the Motif Atlas
- Homologous match to HL_8C3A_050
- Geometric discrepancy: 0.087
- The information below is about HL_8C3A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
7CPU|1|L5|U|3453
7CPU|1|L5|C|3454
7CPU|1|L5|U|3455
7CPU|1|L5|A|3456
7CPU|1|L5|A|3457
7CPU|1|L5|U|3458
7CPU|1|L5|U|3459
7CPU|1|L5|A|3460
7CPU|1|L5|G|3461
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LV
- 60S ribosomal protein L23
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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