HL_7CPU_058

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

7CPU|1|L5|A|3867, 7CPU|1|L5|C|3874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_058 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1225

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

7CPU|1|L5|U|3863
7CPU|1|L5|C|3864
7CPU|1|L5|A|3865
7CPU|1|L5|A|3866
7CPU|1|L5|A|3867
7CPU|1|L5|C|3868
7CPU|1|L5|G|3869
7CPU|1|L5|G|3870
7CPU|1|L5|U|3871
7CPU|1|L5|A|3872
7CPU|1|L5|A|3873
7CPU|1|L5|C|3874
7CPU|1|L5|G|3875

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29