HL_7CPU_064

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_064 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.1654

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7CPU|1|L5|C|4070
7CPU|1|L5|G|4071
7CPU|1|L5|U|4072
7CPU|1|L5|U|4073
7CPU|1|L5|C|4074
7CPU|1|L5|A|4075
7CPU|1|L5|U|4076
7CPU|1|L5|A|4077
7CPU|1|L5|G|4078

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain Lm

Ubiquitin-60S ribosomal protein L40