HL_7CPU_105

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7CPU|1|S2|U|1301, 7CPU|1|S2|G|1303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7CPU_105 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2792

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7CPU|1|S2|A|1296
7CPU|1|S2|U|1297
7CPU|1|S2|U|1298
7CPU|1|S2|G|1299
7CPU|1|S2|A|1300
7CPU|1|S2|U|1301
7CPU|1|S2|A|1302
7CPU|1|S2|G|1303
7CPU|1|S2|C|1304
7CPU|1|S2|U|1305

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain Sd

40S ribosomal protein S29