HL_7CPU_117
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GGAUCGAAACC
- Length
- 11 nucleotides
- Bulged bases
- 7CPU|1|S6|A|59
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7CPU_117 not in the Motif Atlas
- Homologous match to HL_4V7M_040
- Geometric discrepancy: 0.5721
- The information below is about HL_4V7M_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7CPU|1|S6|G|52
7CPU|1|S6|G|53
7CPU|1|S6|A|54
7CPU|1|S6|U|55
7CPU|1|S6|C|56
7CPU|1|S6|G|57
7CPU|1|S6|A|58
7CPU|1|S6|A|59
7CPU|1|S6|A|60
7CPU|1|S6|C|61
7CPU|1|S6|C|62
Current chains
- Chain S6
- Met-tRNA
Nearby chains
- Chain Lo
- 60S ribosomal protein L36a
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