3D structure

PDB id
7D63 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.3 Å

Loop

Sequence
GAUAGUGGC
Length
9 nucleotides
Bulged bases
7D63|1|SA|G|337
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7D63_012 not in the Motif Atlas
Homologous match to HL_4V88_193
Geometric discrepancy: 0.1863
The information below is about HL_4V88_193
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_82182.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
19

Unit IDs

7D63|1|SA|G|330
7D63|1|SA|A|331
7D63|1|SA|U|332
7D63|1|SA|A|333
7D63|1|SA|G|334
7D63|1|SA|U|335
7D63|1|SA|G|336
7D63|1|SA|G|337
7D63|1|SA|C|338

Current chains

Chain SA
18S rRNA

Nearby chains

Chain RA
Ribosome biogenesis protein ENP2
Chain RY
Protein BFR2
Chain SJ
40S ribosomal protein S8-A
Chain SM
40S ribosomal protein S11-A

Coloring options:


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