HL_7D80_015

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCGGCGAGG

Length

9 nucleotides

Bulged bases

7D80|1|A|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7D80_015 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.2801

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

7D80|1|A|C|486
7D80|1|A|C|487
7D80|1|A|G|488
7D80|1|A|G|489
7D80|1|A|C|490
7D80|1|A|G|491
7D80|1|A|A|492
7D80|1|A|G|493
7D80|1|A|G|494

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

Peptide deformylase

Chain r

50S ribosomal protein L22