HL_7F0D_004

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAUAUAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7F0D_004 not in the Motif Atlas

Geometric match to HL_5J7L_138

Geometric discrepancy: 0.298

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7F0D|1|A|U|160
7F0D|1|A|G|161
7F0D|1|A|A|162
7F0D|1|A|A|163
7F0D|1|A|U|164
7F0D|1|A|A|165
7F0D|1|A|U|166
7F0D|1|A|A|167
7F0D|1|A|U|168
7F0D|1|A|A|169
7F0D|1|A|G|170

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L28