HL_7JQB_025

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

7JQB|1|A|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQB_025 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.1926

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7JQB|1|A|G|1245
7JQB|1|A|A|1246
7JQB|1|A|C|1247
7JQB|1|A|U|1248
7JQB|1|A|C|1249
7JQB|1|A|A|1250
7JQB|1|A|A|1251
7JQB|1|A|C|1252
7JQB|1|A|A|1253
7JQB|1|A|C|1254

Current chains

Chain A

rRNA

Nearby chains

Chain R

Uncharacterized protein

Chain V

uS10