HL_7JQB_026

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7JQB|1|A|U|1300, 7JQB|1|A|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JQB_026 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.3512

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7JQB|1|A|A|1295
7JQB|1|A|U|1296
7JQB|1|A|U|1297
7JQB|1|A|G|1298
7JQB|1|A|A|1299
7JQB|1|A|U|1300
7JQB|1|A|A|1301
7JQB|1|A|G|1302
7JQB|1|A|C|1303
7JQB|1|A|U|1304

Current chains

Chain A

rRNA

Nearby chains

Chain Q

uS19

Chain g

eS31