HL_7JSW_011

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

7JSW|1|1|G|386, 7JSW|1|1|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSW_011 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.4422

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7JSW|1|1|A|382
7JSW|1|1|C|383
7JSW|1|1|A|384
7JSW|1|1|C|385
7JSW|1|1|G|386
7JSW|1|1|U|387
7JSW|1|1|G|388
7JSW|1|1|G|389
7JSW|1|1|U|390
7JSW|1|1|A|391
7JSW|1|1|U|392

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain x

50S ribosomal protein L28