HL_7JT3_040

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

7JT3|1|1|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT3_040 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.1362

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7JT3|1|1|A|1630
7JT3|1|1|G|1631
7JT3|1|1|A|1632
7JT3|1|1|G|1633
7JT3|1|1|A|1634
7JT3|1|1|A|1635
7JT3|1|1|U|1636

Current chains

Chain 1

23S ribosomal RNA

Nearby chains