HL_7LS2_045
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 7LS2|1|A2|C|2549, 7LS2|1|A2|G|2551, 7LS2|1|A2|A|2553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7LS2_045 not in the Motif Atlas
- Homologous match to HL_8C3A_041
- Geometric discrepancy: 0.1162
- The information below is about HL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
7LS2|1|A2|C|2547
7LS2|1|A2|G|2548
7LS2|1|A2|C|2549
7LS2|1|A2|A|2550
7LS2|1|A2|G|2551
7LS2|1|A2|C|2552
7LS2|1|A2|A|2553
7LS2|1|A2|G|2554
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain F2
- 60S ribosomal protein L4
- Chain J2
- 60S ribosomal protein L17
- Chain d2
- 60S ribosomal protein L37
- Chain f2
- 60S ribosomal protein L39
Coloring options: