HL_7LS2_049

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

7LS2|1|A2|A|3298, 7LS2|1|A2|A|3299, 7LS2|1|A2|U|3300, 7LS2|1|A2|A|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_049 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.164

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7LS2|1|A2|U|3295
7LS2|1|A2|U|3296
7LS2|1|A2|U|3297
7LS2|1|A2|A|3298
7LS2|1|A2|A|3299
7LS2|1|A2|U|3300
7LS2|1|A2|U|3301
7LS2|1|A2|A|3302
7LS2|1|A2|A|3303
7LS2|1|A2|A|3304
7LS2|1|A2|A|3305

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

60S ribosomal protein L8

Chain d2

60S ribosomal protein L37