HL_7LS2_086

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

7LS2|1|m2|U|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_086 not in the Motif Atlas

Geometric match to HL_4V88_191

Geometric discrepancy: 0.3443

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7LS2|1|m2|G|290
7LS2|1|m2|G|291
7LS2|1|m2|U|292
7LS2|1|m2|G|293
7LS2|1|m2|A|294
7LS2|1|m2|C|295
7LS2|1|m2|U|296
7LS2|1|m2|C|297

Current chains

Chain m2

18S rRNA

Nearby chains

Chain r2

40S ribosomal protein S4, X isoform

Chain w2

40S ribosomal protein S11