HL_7LS2_107

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7LS2|1|m2|U|1302, 7LS2|1|m2|G|1304

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_107 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.5163

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7LS2|1|m2|A|1297
7LS2|1|m2|U|1298
7LS2|1|m2|U|1299
7LS2|1|m2|G|1300
7LS2|1|m2|A|1301
7LS2|1|m2|U|1302
7LS2|1|m2|A|1303
7LS2|1|m2|G|1304
7LS2|1|m2|C|1305
7LS2|1|m2|U|1306

Current chains

Chain m2

18S rRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain H3

40S ribosomal protein S29

Chain U3

Ubiquitin-40S ribosomal protein S27a

Chain x2

40S ribosomal protein S15