HL_7LS2_119

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS2_119 not in the Motif Atlas

Homologous match to HL_4WT8_217

Geometric discrepancy: 0.3428

The information below is about HL_4WT8_217

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

7LS2|1|n2|G|53
7LS2|1|n2|A|54
7LS2|1|n2|U|55
7LS2|1|n2|C|56
7LS2|1|n2|G|57
7LS2|1|n2|A|58
7LS2|1|n2|A|59
7LS2|1|n2|A|60
7LS2|1|n2|C|61

Current chains

Chain n2

tRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain L1

60S ribosomal protein L10a