HL_7MPI_021

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7MPI|1|A1|A|913, 7MPI|1|A1|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_021 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.0969

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7MPI|1|A1|G|910
7MPI|1|A1|C|911
7MPI|1|A1|G|912
7MPI|1|A1|A|913
7MPI|1|A1|A|914
7MPI|1|A1|A|915
7MPI|1|A1|G|916
7MPI|1|A1|A|917
7MPI|1|A1|C|918

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain AN

60S ribosomal protein L15-A

Chain Aj

60S ribosomal protein L37-A