HL_7MPI_056

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

U(UR3)AAACG(A2M)UAACG

Length

13 nucleotides

Bulged bases

7MPI|1|A1|A|2637, 7MPI|1|A1|C|2644

QA status

Modified nucleotides: UR3, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_056 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.105

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

7MPI|1|A1|U|2633
7MPI|1|A1|UR3|2634
7MPI|1|A1|A|2635
7MPI|1|A1|A|2636
7MPI|1|A1|A|2637
7MPI|1|A1|C|2638
7MPI|1|A1|G|2639
7MPI|1|A1|A2M|2640
7MPI|1|A1|U|2641
7MPI|1|A1|A|2642
7MPI|1|A1|A|2643
7MPI|1|A1|C|2644
7MPI|1|A1|G|2645

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

60S ribosomal protein L10

Chain AT

60S ribosomal protein L21-A

Chain Ab

60S ribosomal protein L29